freshcrate — #bioinformatics

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7 packages • ⭐ 925 total stars

biomcpv0.8.22🌿 Growing⭐494

BioMCP: Biomedical Model Context Protocol

ai bioinformatics clinical-trials genomics llm mcp mcp-server medical rustby genomoncology

OmicsClawv0.1.7🌿 Growing⭐124

Conversational & memory-enabled AI research partner for multi-omics analysis. From biological idea to full research paper.

bioinformatics knowledge-graph llm-agent multi-agents multi-omics python single-cell spatial-transcriptomicsby TianGzlab

SciAgent-Skillsmain@2026-05-28🌿 Growing⭐122

Life sciences computational skills for scientific AI agents

ai-agent bioinformatics claude-code claude-plugin claude-skills drug-discovery genomics life-sciences pythonby jaechang-hits

CASSIAv1.3.1🌿 Growing⭐89

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

ai4science annotation bioinformatics cell-annotation llm multiagent-systems prompt-engineering python retrieved-augmented-generationby ElliotXie

clinicaltrialsgov-mcp-serverv2.6.4🌿 Growing⭐65

MCP server for the ClinicalTrials.gov v2 API. Search trials, retrieve study details and results, and match patients to eligible trials.

ai-agent api-client bioinformatics clinical-trials clinicaltrials clinicaltrials-gov eligibility-criteria health-tech llm-agent typescriptby cyanheads

ChatSpatialv1.2.10🌱 Seedling⭐30

🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.

agentic-ai bioinformatics cell-communication claude-desktop computational-biology deconvolution genomics llm-agent pythonby cafferychen777

ImCmaster@2026-06-01🌱 Seedling⭐1

🖼️ Convert images quickly between formats with ImC, a fast and simple CLI tool built on Pillow for efficient batch processing and clean command usage.

bioinformatics cellprofiler cool dialogue-summarization encryption healthcare-application image image-encryption mcp pythonby DZJOKER123